News/February 24, 2026

Research suggests that training load influences gut microbiome composition and diet quality — Evidence Review

Published by researchers at Edith Cowan University

Researched byConsensus— the AI search engine for science

Table of Contents

Regular exercise intensity may influence the composition of the gut microbiome in athletes, according to a new study from Edith Cowan University. Related research generally supports these findings, showing that exercise and diet quality can independently and jointly impact gut bacteria profiles.

  • Several studies have found that both the intensity and duration of exercise can alter gut microbiota composition, short-chain fatty acid production, and microbial diversity, with some changes reversing when exercise stops 1 5 7.
  • High-intensity or prolonged exercise is associated with increased gut microbial diversity but may also reduce certain beneficial bacteria and increase gut permeability, suggesting a nuanced relationship between exercise load and gut health 7 8 9.
  • Diet quality—especially intake of fiber and plant-based foods—consistently emerges as a major determinant of gut microbiome composition and function, potentially interacting with exercise effects to shape overall gut health 10 12 13.

Study Overview and Key Findings

Understanding how training intensity affects the gut microbiome is increasingly important, as both physical and mental health benefits are linked to gut health. This study addresses a gap by examining not just the differences between athletes and non-athletes, but how fluctuations in exercise load and diet within athletes themselves impact gut bacteria and related health markers. Notably, the research explores the potential roles of exercise-induced lactate and dietary changes during rest periods, areas that have received limited attention in previous work.

Property Value
Organization Edith Cowan University
Authors Ms. Bronwen Charlesson
Population Athletes
Outcome Gut microbiome composition, diet quality, gut transit time
Results Training load affected gut health markers and diet quality.

To contextualize the new findings, we searched the Consensus paper database, which includes over 200 million research papers. The following search queries were used to identify relevant literature:

  1. exercise gut microbiome changes
  2. training load gut health markers
  3. diet quality impact on gut bacteria

Below is a summary of related research, grouped by major topic:

Topic Key Findings
How does exercise (and its intensity) affect gut microbiota? • Exercise alters gut microbiota composition and function, with effects depending on intensity, duration, and individual characteristics such as obesity status 1 2 3 4 5 7 9.
• Intense or prolonged exercise increases gut microbial diversity but may reduce beneficial short-chain fatty acid (SCFA) producers 7 9.
How does diet quality interact with gut microbiome changes in athletes? • Diet quality, especially intake of fiber and plant-based foods, rapidly and reproducibly alters gut microbiome composition and function 10 12 13 14.
• Declines in diet quality—such as increased processed foods and alcohol—are linked to shifts toward pro-inflammatory gut bacteria and reduced SCFA production 10 13.
What are the implications of exercise and diet-induced gut changes for health and performance? • Moderate exercise and high diet quality are associated with reduced inflammation, improved metabolism, and potentially enhanced endurance via gut microbiota modulation 2 3 5 6 9 13.
• Intense exercise can increase gut permeability and inflammation, although elite athletes often exhibit greater microbial diversity 8 9.

How does exercise (and its intensity) affect gut microbiota?

The new study aligns with previous research indicating that exercise, particularly changes in intensity and training load, can significantly influence the composition and function of the gut microbiome. Notably, both increases and decreases in physical activity levels are associated with measurable microbial shifts, some of which may be transient and dependent on ongoing exercise.

  • Exercise interventions in both lean and obese humans have shown that exercise-induced changes in gut bacteria and metabolites are largely reversed when exercise ceases, emphasizing the dynamic nature of these effects 1.
  • Systematic reviews confirm that increased physical activity, including moderate and intense exercise, is linked to more diverse gut microbiota, though intense exercise may reduce certain beneficial populations such as SCFA producers 5 7.
  • Some research suggests that while moderate exercise tends to enhance gut health, intense or prolonged activity can increase gut permeability and inflammation, underlining the importance of exercise dosage 8 9.
  • The interplay between exercise and gut bacteria may also be influenced by factors such as baseline fitness, obesity status, and the specific sport or training regimen 1 2 7.

How does diet quality interact with gut microbiome changes in athletes?

Diet quality emerges as a critical factor influencing the gut microbiome, interacting with exercise to shape the microbial environment in athletes. The new study’s finding that lower diet quality during rest periods corresponds with adverse shifts in gut bacteria is well supported by the literature.

  • Rapid changes in diet composition, particularly increases in animal-based or processed foods, can quickly shift gut microbial populations toward pro-inflammatory profiles, while plant-based or high-fiber diets support beneficial bacteria 10 12 13.
  • Long-term dietary patterns are associated with either pro- or anti-inflammatory features of the gut microbiome, with processed and animal-derived foods linked to inflammation and plant foods linked to mucosal protection 13.
  • During periods of reduced training, athletes may inadvertently harm their gut health if dietary quality declines, even if overall carbohydrate or fiber intake remains unchanged, as observed in the new study 13.
  • Altering diet composition can impact not only microbial diversity but also key metabolites, such as short-chain fatty acids, with downstream effects on systemic health 10 12.

What are the implications of exercise and diet-induced gut changes for health and performance?

Both exercise and diet-induced changes in the gut microbiome have potential consequences for inflammation, metabolism, and physical performance. The study’s observations that gut microbiota may help process exercise-induced lactate and support performance are echoed in several reviews.

  • Moderate exercise and high-quality diets are associated with reduced endotoxemia, lower systemic inflammation, and improved metabolic profiles, likely mediated through beneficial shifts in gut bacteria 2 3 5 6 9 13.
  • Intense exercise may transiently increase gut permeability and inflammation, but elite athletes often exhibit increased gut microbial diversity, which may contribute to performance and recovery 7 8 9.
  • The ability of the gut microbiome to rapidly adapt to changes in diet and activity suggests opportunities for targeted interventions to support athlete health and performance 10 13.
  • There is emerging evidence that the gut microbiome may influence not just health, but also recovery and adaptability to training, though the mechanisms remain to be fully elucidated 4 9.

Future Research Questions

While the evidence linking exercise, diet, and gut microbiome composition is growing, significant gaps remain. Future research should clarify the mechanisms by which training intensity and diet interact to influence health outcomes, as well as the practical implications for athletes and the general population.

Research Question Relevance
How do specific training intensities and durations differentially affect the gut microbiome in athletes? Understanding the dose-response relationship between exercise and gut microbiome will help optimize training regimens for health and performance 1 7 9.
What is the mechanistic role of exercise-induced lactate in shaping gut microbial composition? Elucidating this pathway may reveal new targets for interventions to promote beneficial bacteria and enhance recovery in athletes 9.
How does diet quality, independent of macronutrient intake, modulate exercise-related changes in the gut microbiome? Distinguishing the effects of food quality versus quantity could inform dietary recommendations for athletes during training and rest periods 10 12 13.
Do microbiome changes associated with exercise translate into measurable performance gains or recovery benefits in athletes? Establishing a causal relationship could support targeted microbiome interventions for athletic performance 4 9.
What are the long-term health implications of repeated cycles of high and low training load on the gut microbiome? Understanding chronic adaptations and risks may inform periodization strategies and athlete health management 1 7 13.

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